WebGreenCircRNA. A database for plant circRNAs that act as miRNA decoys. Circular RNAs (circRNAs) are a novel type of RNAs that form covalently closed loop structures with neither 5'- 3' polarities nor polyadenylated ... WebTable 2 Comparison of predicted ath-miR161 network information among evaluated databases. From: Methods for Predicting CircRNA–miRNA–mRNA Regulatory Networks: GreenCircRNA and PlantCircNet Databases as Study Cases
Did you know?
WebJan 9, 2024 · A total of eight plant species are represented in PlantCircNet, 21 in PlantcircBase 7.0, two in CropCircDB, five in LeafcircBase, seven in circFunBase, one in AtCircDB, and 69 in GreenCircRNA. In these databases, circRNA-related information, including their positions in the genome, host genes, and bioinformatics tools, are provided. WebHere, taking Arabidopsis thaliana as an example, we firstly show the method for identification of circRNA and construction of circRNA-miRNA-mRNA networks based on …
WebJan 1, 2024 · Circular RNAs are molecules formed by 3'-5' ligation in a splicing reaction, the so-called backsplicing. Well described in other groups, especially in humans, circRNA studies that include prediction and validation in plants are recent. It has already been shown that circRNAs can interact with microRNAs, acting as sponges, and adding a new layer … WebMethods for Predicting CircRNA-miRNA-mRNA Regulatory Networks: GreenCircRNA and PlantCircNet Databases as Study Cases Methods Mol Biol. 2024;2362:181-193. doi: …
WebGreenCircRNA: a database for plant circRNAs that act as miRNA decoys Jingjing Zhang2,†, Zhiqiang Hao2,† and Shuwei Yin2 and Guanglin Li1,2,* 1Key Laboratory of Ministry of Education for Medicinal Plant Resource and Natural Pharmaceutical Chemistry, Shaanxi Normal University, West Chang’an Street, Xi’an 710062, China. and 2College of … WebZhang J, Hao Z, Yin S et al (2024) GreenCircRNA: a database for plant circRNAs that act as miRNA decoys. Database (Oxford) 2024:1–9 Chu Q, Zhang X, Zhu X et al (2024) …
WebJan 1, 2024 · Constructing CircRNA-miRNA-mRNA Regulatory Networks by Using GreenCircRNA Database. Jingjing Zhang, Ruiqi Liu, Guanglin Li Methods in Molecular …
WebJul 1, 2024 · GreenCircRNA is a recently published database focused on circRNAs from 69 plant species that act as decoys of miRNA . Moreover, this repository includes basic information about the circRNAs , including their genomic localization, host gene and basal expression values. Besides ... how to stop sneezing a lotWebConstructing CircRNA–miRNA–mRNA Regulatory Networks by Using GreenCircRNA Database . Jingjing Zhang, Ruiqi Liu, Guanglin Li; Pages 173-179. Methods for Predicting CircRNA–miRNA–mRNA Regulatory Networks: GreenCircRNA and PlantCircNet Databases as Study Cases. Nureyev F. Rodrigues, Rogerio Margis; Pages 181-193. read me mawWebJul 1, 2024 · GreenCircRNA is the first database for the prediction of circRNAs that act as miRNA decoys and contains the largest number of plant species. Database URL: … read me my horoscopeWebGreenCircRNA(v1.0) is the most comprehensive database containing 213,494 circRNA informations from over 4100 RNA-seq datasets across 69 different species. Based on … how to stop sneaking foodWebRogerio Margis completed his doctorate at the Institute de Biologie Moleculaire des Plantes, IBMP CNRS, Université Louis Pasteur de Strasbourg I, France, in 1993. In 2002 he finished a postdoctoral on the process of RNA interference and microRNAs in plant production at CSIRO Plant Industry in Canberra, Australia. Currently has a CNPq 1B … how to stop sneezing and runny nose coldWebIntroduction. The formation of chronic intractable wounds is a common, high incidence complication of diabetes that can be a burden and inconvenience for recipients (1, 2).Although many studies have been carried out on chronic intractable wound disease and pathogenicity (3, 4), few studies have focussed on the gene regulation of chronic … how to stop sneezing immediatelyWebFeb 14, 2024 · The functional study on circRNAs has been increasing in the past decade due to its important roles in micro RNA sponge, protein coding, the initiation, and progression of diseases. The study of circRNA functions depends on the full-length sequences of circRNA, and current sequence assembly methods based on short reads … how to stop sneezing with a cold